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Registro Completo |
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Biblioteca(s): |
Embrapa Agricultura Digital. |
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Data corrente: |
24/01/2023 |
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Data da última atualização: |
14/03/2023 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Autoria: |
CAMARGO, A. P.; SOUZA, R. S. C. de; JOSE, J.; GERHARDT, I. R.; DANTE, R. A.; MUKHERJEE, S.; HUNTEMANN, M.; KYRPIDES, N. C.; CARAZZOLLE, M. F.; ARRUDA, P. |
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Afiliação: |
ANTONIO P. CAMARGO, UNIVERSIDADE ESTADUAL DE CAMPINAS; RAFAEL S. C. DE SOUZA, UNIVERSIDADE ESTADUAL DE CAMPINAS, SYMBIOMICS MICROBIOME SOLUTIONS; JULIANA JOSE, UNIVERSIDADE ESTADUAL DE CAMPINAS; ISABEL RODRIGUES GERHARDT, CNPTIA; RICARDO AUGUSTO DANTE, CNPTIA; SUPRATIM MUKHERJEE, DEPARTMENT OF ENERGY JOINT GENOME INSTITUTE; MARCEL HUNTEMANN, DEPARTMENT OF ENERGY JOINT GENOME INSTITUTE; NIKOS C. KYRPIDES, DEPARTMENT OF ENERGY JOINT GENOME INSTITUTE; MARCELO F. CARAZZOLLE, UNIVERSIDADE ESTADUAL DE CAMPINAS; PAULO ARRUDA, UNIVERSIDADE ESTADUAL DE CAMPINAS. |
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Título: |
Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. |
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Ano de publicação: |
2023 |
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Fonte/Imprenta: |
The ISME Journal, v. 17, n. 3, p. 354-370, Mar. 2023. |
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DOI: |
https://doi.org/10.1038/s41396-022-01345-1 |
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Idioma: |
Inglês |
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Conteúdo: |
The substrates of the Brazilian campos rupestres, a grassland ecosystem, have extremely low concentrations of phosphorus and nitrogen, imposing restrictions to plant growth. Despite that, this ecosystem harbors almost 15% of the Brazilian plant diversity, raising the question of how plants acquire nutrients in such a harsh environment. Here, we set out to uncover the taxonomic profile, the compositional and functional differences and similarities, and the nutrient turnover potential of microbial communities associated with two plant species of the campos rupestres-dominant family Velloziaceae that grow over distinct substrates (soil and rock). Using amplicon sequencing data, we show that, despite the pronounced composition differentiation, the plant-associated soil and rock communities share a core of highly efficient colonizers that tend to be highly abundant and is enriched in 21 bacterial families. Functional investigation of metagenomes and 522 metagenome-assembled genomes revealed that the microorganisms found associated to plant roots are enriched in genes involved in organic compound intake, and phosphorus and nitrogen turnover. We show that potential for phosphorus transport, mineralization, and solubilization are mostly found within bacterial families of the shared microbiome, such as Xanthobacteraceae and Bryobacteraceae. We also detected the full repertoire of nitrogen cycle-related genes and discovered a lineage of Isosphaeraceae that acquired nitrogen-fixing potential via horizontal gene transfer and might be also involved in nitrification via a metabolic handoff association with Binataceae. We highlight that plant-associated microbial populations in the campos rupestres harbor a genetic repertoire with potential to increase nutrient availability and that the microbiomes of biodiversity hotspots can reveal novel mechanisms of nutrient turnover. MenosThe substrates of the Brazilian campos rupestres, a grassland ecosystem, have extremely low concentrations of phosphorus and nitrogen, imposing restrictions to plant growth. Despite that, this ecosystem harbors almost 15% of the Brazilian plant diversity, raising the question of how plants acquire nutrients in such a harsh environment. Here, we set out to uncover the taxonomic profile, the compositional and functional differences and similarities, and the nutrient turnover potential of microbial communities associated with two plant species of the campos rupestres-dominant family Velloziaceae that grow over distinct substrates (soil and rock). Using amplicon sequencing data, we show that, despite the pronounced composition differentiation, the plant-associated soil and rock communities share a core of highly efficient colonizers that tend to be highly abundant and is enriched in 21 bacterial families. Functional investigation of metagenomes and 522 metagenome-assembled genomes revealed that the microorganisms found associated to plant roots are enriched in genes involved in organic compound intake, and phosphorus and nitrogen turnover. We show that potential for phosphorus transport, mineralization, and solubilization are mostly found within bacterial families of the shared microbiome, such as Xanthobacteraceae and Bryobacteraceae. We also detected the full repertoire of nitrogen cycle-related genes and discovered a lineage of Isosphaeraceae that acquired nitrogen-fixing pot... Mostrar Tudo |
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Palavras-Chave: |
Campos rupestres; Data sequencing; Ecossistema de pastagens; Microbioma vegetal; Plant microbiomes; Sequenciamento de dados; Soil microbes. |
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Thesagro: |
Bactéria; Genoma; Nitrogênio. |
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Thesaurus Nal: |
Genome; Nitrogen; Velloziaceae. |
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Categoria do assunto: |
-- |
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URL: |
https://ainfo.cnptia.embrapa.br/digital/bitstream/doc/1151181/1/AP-Plant-microbiomes-2022.pdf
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Marc: |
LEADER 03054naa a2200397 a 4500
001 2151181
005 2023-03-14
008 2023 bl uuuu u00u1 u #d
024 7 $ahttps://doi.org/10.1038/s41396-022-01345-1$2DOI
100 1 $aCAMARGO, A. P.
245 $aPlant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot.$h[electronic resource]
260 $c2023
520 $aThe substrates of the Brazilian campos rupestres, a grassland ecosystem, have extremely low concentrations of phosphorus and nitrogen, imposing restrictions to plant growth. Despite that, this ecosystem harbors almost 15% of the Brazilian plant diversity, raising the question of how plants acquire nutrients in such a harsh environment. Here, we set out to uncover the taxonomic profile, the compositional and functional differences and similarities, and the nutrient turnover potential of microbial communities associated with two plant species of the campos rupestres-dominant family Velloziaceae that grow over distinct substrates (soil and rock). Using amplicon sequencing data, we show that, despite the pronounced composition differentiation, the plant-associated soil and rock communities share a core of highly efficient colonizers that tend to be highly abundant and is enriched in 21 bacterial families. Functional investigation of metagenomes and 522 metagenome-assembled genomes revealed that the microorganisms found associated to plant roots are enriched in genes involved in organic compound intake, and phosphorus and nitrogen turnover. We show that potential for phosphorus transport, mineralization, and solubilization are mostly found within bacterial families of the shared microbiome, such as Xanthobacteraceae and Bryobacteraceae. We also detected the full repertoire of nitrogen cycle-related genes and discovered a lineage of Isosphaeraceae that acquired nitrogen-fixing potential via horizontal gene transfer and might be also involved in nitrification via a metabolic handoff association with Binataceae. We highlight that plant-associated microbial populations in the campos rupestres harbor a genetic repertoire with potential to increase nutrient availability and that the microbiomes of biodiversity hotspots can reveal novel mechanisms of nutrient turnover.
650 $aGenome
650 $aNitrogen
650 $aVelloziaceae
650 $aBactéria
650 $aGenoma
650 $aNitrogênio
653 $aCampos rupestres
653 $aData sequencing
653 $aEcossistema de pastagens
653 $aMicrobioma vegetal
653 $aPlant microbiomes
653 $aSequenciamento de dados
653 $aSoil microbes
700 1 $aSOUZA, R. S. C. de
700 1 $aJOSE, J.
700 1 $aGERHARDT, I. R.
700 1 $aDANTE, R. A.
700 1 $aMUKHERJEE, S.
700 1 $aHUNTEMANN, M.
700 1 $aKYRPIDES, N. C.
700 1 $aCARAZZOLLE, M. F.
700 1 $aARRUDA, P.
773 $tThe ISME Journal$gv. 17, n. 3, p. 354-370, Mar. 2023.
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Registro original: |
Embrapa Agricultura Digital (CNPTIA) |
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| Registros recuperados : 11 | |
| 3. |  | SOUZA, R. S. C. de; TONON, R. V.; STEPHAN, M. P.; SILVA, C. M.; PENTEADO, A. L.; CABRAL, L. M. C.; KUROZAWA, L. E. Avaliação do potencial antioxidante de proteínas do soro de leite concentradas por ultrafiltração e hidrolisadas por diferentes proteases comerciais. Brazilian Journal of Food Technology, v. 22, e2018021, 2019.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Agroindústria de Alimentos; Embrapa Meio Ambiente. |
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| 4. | | PEREZ, J. B.; SOUZA, R. S. C. de; ANTONIASSI, R.; BIZZO, H. R.; GAMA, M. A. S. da; LOPES, F. C. F. Perfil de ácidos graxos em cultivares de capim elefante utilizados na alimentação de vacas leiteiras. In: REUNIãO ANUAL DA SOCIEDADE BRASILEIRA DE QUíMICA, 33., 2010, Águas de Lindóia. Anais... Águas de Lindóia: SBQ, 2010. 2 p.| Tipo: Artigo em Anais de Congresso |
| Biblioteca(s): Embrapa Gado de Leite. |
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| 5. | | PEREZ, J. B.; SOUZA, R. S. C. de; ANTONIASSI, R.; BIZZO, H. R.; GAMA, M. A. S. da; LOPES, F. C. F. Perfil de ácidos graxos em cultivares de capim elefante utilizados na alimentação de vacas leiteiras. In: REUNIÃO ANUAL DA SOCIEDADE BRASILEIRA DE QUÍMICA, 33., 2010, Águas de Lindóia. A Química construindo um futuro melhor. São Paulo: Sociedade Brasileira de Química, 2010. 1 CD-ROM.| Tipo: Resumo em Anais de Congresso |
| Biblioteca(s): Embrapa Agroindústria de Alimentos. |
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| 6. | | CAMARGO, A. P.; SOUZA, R. S. C. de; JOSE, J.; GERHARDT, I. R.; DANTE, R. A.; MUKHERJEE, S.; HUNTEMANN, M.; KYRPIDES, N. C.; CARAZZOLLE, M. F.; ARRUDA, P. Plant microbiomes harbor potential to promote nutrient turnover in impoverished substrates of a Brazilian biodiversity hotspot. The ISME Journal, v. 17, n. 3, p. 354-370, Mar. 2023.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: A - 1 |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 7. | | YASSITEPE, J. E. de C. T.; DANTE, R. A.; GERHARDT, I. R.; FERNANDES, F. R.; SOUZA, R. S. C. de; SILVA, V. C. H. da; RIBEIRO, A. P.; SILVA, M. J. da; ARRUDA, P. Centro de pesquisa em genômica aplicada a mudanças climáticas. In: SOTTA, E. D.; SAMPAIO, F. G.; MARZALL, K.; SILVA, W. G. da (org.). Estratégias de adaptação às mudanças do clima dos sistemas agropecuários brasileiros. Brasília, DF: MAPA, 2021. p. 62-63.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 8. | | YASSITEPE, J. E. de C. T.; DANTE, R. A.; GERHARDT, I. R.; FERNANDES, F. R.; SOUZA, R. S. C. de; ARMANHI, J. S. L.; SILVA, V. C. H. da; RIBEIRO, A. P.; SILVA, M. J. da; ARRUDA, P. Genômica aplicada às mudanças climáticas: biotecnologia para a agricultura digital. In: MASSRUHÁ, S. M. F. S.; LEITE, M. A. de A.; OLIVEIRA, S. R. de M.; MEIRA, C. A. A.; LUCHIARI JUNIOR, A.; BOLFE, E. L. (Ed.). Agricultura digital: pesquisa, desenvolvimento e inovação nas cadeias produtivas. Brasília, DF: Embrapa, 2020. cap. 11, p. 258-276.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 9. | | YASSITEPE, J. E. de C. T.; DANTE, R. A.; GERHARDT, I. R.; FERNANDES, F. R.; SOUZA, R. S. C. de; ARMANHI, J. S. L.; SILVA, V. C. H. da; RIBEIRO, A. P.; SILVA, M. J. da; ARRUDA, P. Genomics applied to climate change: Biotechnology for digital agriculture. In: MASSRUHÁ, S. M. F. S.; LEITE, M. A. de A.; OLIVEIRA, S. R. de M.; MEIRA, C. A. A.; LUCHIARI JUNIOR, A.; BOLFE, E. L. (ed.). Digital agriculture: research, development and innovation in production chains. Brasília, DF: Embrapa, 2023. cap. 11, p. 195-208.| Tipo: Capítulo em Livro Técnico-Científico |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| 10. | | YASSITEPE, J. E. de C. T.; DANTE, R. A.; GERHARDT, I. R.; FERNANDES, F. R.; SOUZA, R. S. C. de; SILVA, V. C. H. da; RIBEIRO, A. P.; SILVA, M. J. da; ARRUDA, P. Genomics applied to climate change research center. In: SOTTA, E. D.; SAMPAIO, F. G.; MARZALL, K.; SILVA, W . G. da (ed.). Adapting to climate change: strategies for Brazilian agricultural and livestock systems. Brasília, DF: MAPA, 2021. p. 62-63.| Biblioteca(s): Embrapa Agricultura Digital. |
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| 11. | | CAMARGO, A. P.; SOUZA, R. S. C. de; COSTA, P. de B.; GERHARDT, I. R.; DANTE, R. A.; TEODORO, G. S.; ABRAHÃO, A.; LAMBERS, H.; CARAZZOLLE, M. F.; HUNTEMANN, M.; CLUM, A.; FOSTER, B.; FOSTER, B.; ROUX, S.; PALANIAPPAN, K.; VARGHESE, N.; MUKHERJEE, S.; REDDY, T. B. K.; DAUM, C.; COPELAND, A.; CHENM U, M. A.; IVANOVA, N. N.; KYRPIDES, N. C.; PENNACCHIO, C.; ELOE-FADROSH, E. A.; ARRUDA, P.; OLIVEIRA, R. S. Microbiomes of Velloziaceae from phosphorus-impoverished soils of the campos rupestres, a biodiversity hotspot. Scientific Data, v. 6, p. 1-11, 2019. Article number: 140.| Tipo: Artigo em Periódico Indexado | Circulação/Nível: B - 1 |
| Biblioteca(s): Embrapa Agricultura Digital. |
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| Registros recuperados : 11 | |
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| Nenhum registro encontrado para a expressão de busca informada. |
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